SPT: Single particle tracking analysisΒΆ
This package provides a complete single particle tracking analysis workflow based on picasso_addon, picasso and trackpy python packages including:
- Localization of raw movies based on picasso_addon (auto net-gradient) and picasso.localize
- Autopicking of localization clusters (picasso_addon) and analysis of immobilized particles
- Linking of localizations into trajectories using trackpy
- Individual mean-square-displacement computation and linear iterative fitting
- Subtrajectory analysis for estimation of underlying diffusion behavior
- Easy to use script batch processing
- SPT requires the following packages:
- picasso : Localization and rendering of super-resolution images
- picasso_addon : Further functionalities for picasso (auto net-gradient, autopick)
SPT was used for data analysis in: